Welcome to PhyloMagnet’s documentation!¶

Contents:

  • Installation Instructions for PhyloMagnet
    • Nextflow
    • Singularity
    • Singularity container
    • PhyloMagnet
  • Command line options
    • Query options
    • Reference options
    • Output options
    • Run parameters
  • Example Usage
    • Using Bioproject IDs and eggNOG references
    • Using SRA run IDs and local references
    • Using local FastQ file and local + eggNOG references
  • Troubleshooting
    • Out of Memory
    • data.jar not found
  • Contact
  • Citation

Indices and tables¶

  • Index
  • Module Index
  • Search Page

PhyloMagnet

Navigation

  • Installation Instructions for PhyloMagnet
  • Command line options
  • Example Usage
  • Troubleshooting
  • Contact
  • Citation

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