github: @maxemil <ttps://>’ ‘ <>’


If you use PhyloMagnet, please cite the article: Max E Schön, Laura Eme, Thijs J G Ettema, PhyloMagnet: fast and accurate screening of short-read meta-omics data using gene-centric phylogenetics, Bioinformatics, btz799,

Also cite all the software that PhyloMagnet uses internally, depending on your choice of tree and alignment software:

diamond: doi:10.1038/nmeth.3176 and

megan: doi:10.1371/journal.pcbi.1004957 and doi:10.1186/s40168-017-0233-2 and

papara: doi:10.1093/bioinformatics/btr320 and

epa-ng: doi:10.1093/sysbio/syy054 and

gappa: doi:10.1101/647958 and

iqtree: doi:10.1093/molbev/msu300 and

FastTree: doi:10.1371/journal.pone.0009490 and

raxml-ng: doi:10.1093/bioinformatics/btz305 and

mafft: doi:10.1093/molbev/mst010 and

prank: doi:10.1007/978-1-62703-646-7_10 and